FastQCFastQC Report
Sun 21 May 2023
EGAF00007926578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535229
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34100.6371104704715178No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG21750.4063681153300737No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18680.34900948939612764No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17680.33032589788669897No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG17060.3187420711508532No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16160.30192683879236737No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15800.29520074584897305No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13710.25615203959426713No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13510.25241532129238137No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12460.23279755020748127No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12320.23018184739616127No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10840.20253013196220682No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10600.19804606999994392No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10100.18870427424522962No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10050.1877700946697582No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9140.17076802639617808No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9090.16983384682070665No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7750.14479783419807224No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7660.14311631096222366No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7660.14311631096222366No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7410.1384454130848665No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6570.12275119621694638No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6360.11882764199996637No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5440.101638737811292No Hit

[OK]Adapter Content

Adapter graph