FastQCFastQC Report
Sun 21 May 2023
EGAF00007926580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520170
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48520.9327719783916796No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32900.6324855335755618No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG20630.39660111117519276No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17350.33354480266066866No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16080.3091297075955938No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16050.3085529730664975No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15370.2954803237403157No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15160.2914431820366419No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13310.255877886075706No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13190.253570947959321No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11840.22761789414998942No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11760.22607993540573273No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11090.213199530922583No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9950.19128361881692524No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9730.18705423227021936No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9490.1824403560374493No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8740.16802199281004288No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7500.14418363227406425No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7460.1434146529019359No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6920.13303343137820328No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6910.13284118653517119No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6810.13091873810485033No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5680.10919507084222466No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5510.10592690851067921No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5210.10015956321971663No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)