FastQCFastQC Report
Wed 31 May 2023
EGAF00007926581

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926581
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530648
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG19790.37294025417979526No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19040.35880659118662467No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17090.32205906740438106No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT11340.21370098445673968No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10640.20050956566311376No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG9940.18731814686948786No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG9110.17167689315704573No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8990.16941550707813843No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8480.15980461624278242No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8420.15867392320332876No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8310.1566009859643304No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8170.15396270220560523No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA8030.15132441844688005No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7910.14906303236797275No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7370.1388867950128899No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG7350.13850989733307204No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7300.1375676531335273No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7050.13285643213580378No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6680.12588382505917295No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6270.11815742262290634No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6230.11740362726327057No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA6040.11382309930500069No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5860.11043102018663974No Hit
CCCATGACGGATTCCTGTCACCGAAGGATGCGTACTCCTGGCGA5850.1102425713467308No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC5730.10798118526782348No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5580.10515445266918937No Hit
CGGCGAAGCGACCGTTGAAAAAGGTGGATGCAACTGATTTAAAT5520.10402375962973573No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT5400.10176237355082841No Hit
GTACTCCAGTCGGTGTTTCCGCCCTCTACGCGGCGAAGCGACCG5330.10044323167146584No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)