FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530648
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48800.9196303387556346No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41870.7890352926987381No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT19680.3708673169407969No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA13590.2561019734362515No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT12630.2380108848049931No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT11600.21860065429437214No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10380.1956098958254813No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10060.18957953294839516No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9880.1861874538300342No Hit
TACGACGACTTCCATACCGATGAAGATAAAC9720.18317227239149114No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9540.17978019327313022No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA9450.17808415371394973No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9120.17186534199695466No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8740.1647042860804149No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT8550.161123758122145No Hit
TCCTACACCAACGGCAAACTGACTATCACCC8480.15980461624278242No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8340.15716633248405723No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8020.15113596960697112No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7970.1501937254074264No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT7350.13850989733307204No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7350.13850989733307204No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7100.13379867633534848No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7000.13191418793625906No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6990.13172573909635013No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG6960.1311603925766233No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6500.122491745940812No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6400.12060725754172257No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5790.10911187830727714No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA5740.10816963410773245No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5620.10590824802882512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)