FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549490
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG22090.40200913574405356No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19040.34650312107590675No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16990.30919579974157857No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT11730.21347067280569257No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10490.19090429307175746No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG9690.17634533840470254No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9290.1690658610711751No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9280.1688838741378369No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9260.16851990027116054No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG9020.16415221387104406No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA8820.16051247520428033No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8550.1555988280041493No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8300.15104915467069466No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA8140.14813736373728367No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC8080.14704544213725454No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG8010.14577153360388723No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7750.1410398733370944No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7710.14031192560374164No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7510.13667218693697794No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6710.12211323226992302No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6010.10937414693624997No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6000.1091921600029118No Hit
CGGCGAAGCGACCGTTGAAAAAGGTGGATGCAACTGATTTAAAT5840.10628036906950081No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC5760.10482447360279533No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5560.1011847349360316No Hit
CCCATGACGGATTCCTGTCACCGAAGGATGCGTACTCCTGGCGA5540.10082076106935522No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG5530.10063877413601705No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)