FastQCFastQC Report
Sun 21 May 2023
EGAF00007926584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549490
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43280.7876394474876705No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT22290.4056488744108173No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA13470.245136399206537No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT12620.22966750987279114No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT12400.22566379733935105No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10790.19636390107190305No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10720.19508999253853573No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA10330.18799250213834645No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA10010.1821689202715245No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9730.17707328613805529No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9610.17488944293799705No Hit
TACGACGACTTCCATACCGATGAAGATAAAC9570.1741614952046443No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA9510.1730695736046152No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT9370.17052175653788057No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9240.16815592640448415No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9160.16670003093777866No Hit
TCCTACACCAACGGCAAACTGACTATCACCC8620.1568727365375166No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8470.15414293253744382No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8140.14813736373728367No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT8130.14795537680394547No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG7960.1448615989371963No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG7960.1448615989371963No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7760.1412218602704326No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT7150.13012065733680322No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6860.12484303626999582No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6630.12065733680321754No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA6330.11519772880307196No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6100.11101202933629366No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5810.10573440826948624No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5790.10537043440280987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)