FastQCFastQC Report
Wed 31 May 2023
EGAF00007926589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542422
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC32280.5951086054769166No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT32260.5947398888688143No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC26760.4933428216407152No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19130.352677435649734No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG18710.3449343868795882No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA16380.3019789020356844No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC16320.3008727522113779No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14320.26400109140115996No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG13920.2566267592391164No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10600.19541980229415473No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9650.17790576340930123No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9470.17458731393638163No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9330.17200629767966638No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7980.14711792663276932No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC6590.12149212236966789No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6580.1213077640656168No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6460.11909546441700374No Hit
GTGGCGGCTGCCAGAATGGCGGCTGCCGTCGCCGGACTGTTCTT6440.11872674780890155No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT6360.11725188137649285No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT6130.11301164038331779No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6020.11098369903875581No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5920.1091401159982449No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5790.10674345804558075No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT5770.10637474143747856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)