FastQCFastQC Report
Wed 31 May 2023
EGAF00007926590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542422
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA72121.3295920888164565No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA38490.709595112292643No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA35930.6623993864555642No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19130.352677435649734No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC16810.30990630910988126No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC15290.28188384689411566No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14870.2741407981239699No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14090.25976085040798497No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11620.21422434930736586No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10200.18804547013211115No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9980.18398958744298718No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9820.18103985457816976No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9360.17255937259181967No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8760.1614978743487543No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA7480.13790001143021485No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG7020.12941952944386476No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7000.12905081283576256No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6850.12628543827499622No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6660.12278263049802553No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6340.11688316476839067No Hit
TCCGTCGACCGTTCCGGCCATTCCGGTTACC6180.11393343190357325No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6050.11153677395090907No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6020.11098369903875581No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5660.1043468000929166No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5480.10102835061999699No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)