FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926591

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926591
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546017
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT32930.6030947754373948No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC32690.5986993078970069No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC26680.4886294749064589No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19570.3584137490224663No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG18510.3390004340524196No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA16450.30127267099742316No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC16230.2972434924187342No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14120.25860000695949026No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG13940.2553034063041993No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG11180.20475552958973803No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10280.18827252631328328No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9910.18149618052185187No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9070.1661120441304941No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8040.1472481626029959No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT6740.12343938009256121No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT6680.12234051320746424No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC6650.12179107976491574No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6570.12032592391811976No Hit
GTGGCGGCTGCCAGAATGGCGGCTGCCGTCGCCGGACTGTTCTT6480.11867762359047429No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6340.11611360085858131No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6150.11263385572244088No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT6000.10988668850969842No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5650.10347663167996601No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5640.10329348719911652No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA5560.10182833135232053No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)