FastQCFastQC Report
Wed 31 May 2023
EGAF00007926592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546017
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA73381.3439142004736115No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA37800.6922861376111No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA36160.6622504427517825No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20010.3664721061798442No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC16730.3064007164612091No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC15010.27489986575509556No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14560.26665836411686816No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13970.25585283974674783No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA12170.22288683319383829No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10620.1944994386621662No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10560.1934005717770692No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10110.18515907013884184No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9410.17233895647937703No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8830.16171657659010616No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA7580.138823516483919No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7240.1325966041350361No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG7240.1325966041350361No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7180.1314977372499391No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7080.12966629244144412No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6480.11867762359047429No Hit
TCCGTCGACCGTTCCGGCCATTCCGGTTACC6180.11318328916498936No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6100.1117181333181934No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5880.10768895473950446No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5560.10182833135232053No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5530.10127889790977204No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5490.10054631998637405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)