FastQCFastQC Report
Wed 31 May 2023
EGAF00007926593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528612
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT31630.5983594772725553No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC31100.5883332198285322No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC26020.49223248810091336No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18000.340514403759279No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG17520.3314340196590316No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC16910.31989436486496714No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA16700.3159216968211089No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14330.2710873003261371No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG13060.24706211739423245No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10650.2014710222242401No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10060.19030971676768593No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9430.17839171263611117No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8710.16477113648574002No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6760.12788207607848479No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT6690.1265578533971987No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6620.12523363071591262No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC6610.12504445604715747No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6500.12296353469085075No Hit
GTGGCGGCTGCCAGAATGGCGGCTGCCGTCGCCGGACTGTTCTT6270.1186125173094822No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5910.1118022292342966No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5730.10839708519670382No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5530.10461359182160072No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT5480.10366771847782495No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5460.10328936914031463No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5430.10272184513404918No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)