FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528612
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA68991.3051160397418144No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47630.9010389472808032No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA36780.6957844316814601No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA33420.632221742979728No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17890.33843348240297233No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC16680.3155433474835986No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14660.27733006439505725No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC14370.27184399900115774No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13720.25954764553207266No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11630.22001013976224526No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9840.18614787405507252No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9750.18444530203627615No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8820.16685205784204674No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7930.15001551232283794No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA7290.137908333522508No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG6980.1320439187910982No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6840.12939547342852603No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6800.1286387747535054No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6580.12447693204089201No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6320.11955839065325798No Hit
TCCGTCGACCGTTCCGGCCATTCCGGTTACC6040.11426149992811363No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5640.10669451317790743No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5560.10518111582786618No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5520.10442441715284556No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5330.10083009844649762No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)