FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523459
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23510.44912782089905795No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17980.3434843989691647No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16830.3215151520940513No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG13990.2672606641589886No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13620.2601922977730825No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13290.25388807910457173No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA12180.2326829799468535No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12010.2294353521479237No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11730.22408631812615695No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11080.21166891771848417No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11040.21090477000108893No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10920.20861232684890313No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC10780.2059378098380198No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10510.20077981274560186No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10400.19867840652276494No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8890.16983183019109424No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8650.16524694388672273No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8630.16486487002802513No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8590.16410072231062986No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8550.1633365745932346No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8250.15760546671277023No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC8240.15741442978342143No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7970.1522564326910035No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7840.14977295260946893No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7800.1490088048920737No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7350.14041214307137712No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7310.1396479953539819No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7090.135445182908308No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7070.13506310904961039No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6890.13162444432133177No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6840.1306692596745877No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6520.12455607793542571No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6430.12283674557128639No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6150.11748771154951965No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6110.1167235638321244No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG5950.1136669729625434No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCA5630.10755379122338139No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5540.10583445885924209No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5440.10392408956575395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)