FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926612
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528927
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA21560.4076176863725996No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13920.2631743132795263No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12570.2376509423795722No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12420.23481501227957732No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12370.2338697022462457No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11950.22592909796625998No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10520.19889323101297532No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9930.18773857261966206No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9830.18584795255299882No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9800.18528076653299982No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8360.15805583757304884No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8180.15465272145305495No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8130.15370741141972333No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7690.14538868312640496No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7260.13725901683975295No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7250.13706995483308662No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6900.1304527845997652No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5540.10474035169314481No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5420.10247160761314889No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5370.10152629757981727No Hit

[OK]Adapter Content

Adapter graph