FastQCFastQC Report
Wed 31 May 2023
EGAF00007926614

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926614
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532458
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA21100.3962753869788791No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13440.25241427492872676No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12940.24302386291500927No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12520.23513591682348656No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12210.22931386137498166No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11680.21936002464044113No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10660.2002035841324574No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10480.19682303580751911No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9840.18480330842996068No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9820.18442769194941197No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9040.16977864920801267No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8040.15099782518057764No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7960.1494953592583828No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7540.14160741316686012No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7310.13728782364055006No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6970.13090234347122215No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6960.13071453523094778No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6000.11268494416461017No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5630.10573603927445921No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5550.10423357335226441No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5490.10310672391061831No Hit

[OK]Adapter Content

Adapter graph