FastQCFastQC Report
Wed 31 May 2023
EGAF00007926616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484939
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13280.273848875837992No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12030.24807243797673523No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11610.23941155485535295No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8530.17589841196521624No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7250.1495033395952893No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7040.14517289803459818No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6860.1414610909825772No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6830.14084245647390703No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6780.13981139895945677No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6710.13836791843922636No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6430.13259399635830485No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6340.13073809283229437No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6200.1278511317918336No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6040.12455174774559274No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6010.12393311323692258No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG5860.12083994069357178No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5770.11898403716756127No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5730.11815919115600107No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5290.10908588502883867No Hit
GAACCGATCTACGCTACCATCGACGACCTGG4880.10063121341034645No Hit

[OK]Adapter Content

Adapter graph