FastQCFastQC Report
Wed 31 May 2023
EGAF00007926622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501525
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA23730.47315687154179753No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18640.37166641742684814No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15460.30825980758686006No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA12170.242659887343602No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10190.20318030008474156No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9870.1967997607297742No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9820.19580280145556056No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9780.19500523403618963No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8120.1619061861322965No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7490.14934449927720453No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6930.13817855540601165No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6500.1296047056477743No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6460.12880713822840337No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6420.12800957080903244No Hit
GCAGTCACCACCGAAGTTGCATTCGGTCTGG6370.1270126115348188No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6220.12402173371217787No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC6080.12123024774437965No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5800.1156472758087832No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5780.11524849209909775No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5760.11484970838941229No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5730.11425153282488411No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5330.10627585863117492No Hit

[OK]Adapter Content

Adapter graph