FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926624

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926624
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477717
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42680.8934159764044403No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23380.48941109485322903No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17770.37197755156295464No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13980.29264187793191365No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA11240.23528574448889195No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9680.20263042763812047No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9590.200746467050576No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9020.1888147166627941No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7550.1580433603995671No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6740.1410877151116665No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6370.1333425438073169No Hit
GCAGTCACCACCGAAGTTGCATTCGGTCTGG6160.12894663576971305No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6030.12622535936548207No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5980.125178714594624No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5970.1249693856404524No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5920.12392274086959434No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5530.11575891165690147No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC5490.11492159584021502No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5230.10947904303175311No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5070.1061297797650073No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4820.10089655591071701No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC4780.10005924009403057No Hit

[OK]Adapter Content

Adapter graph