FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540045
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18290.3386754807469748No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC10540.19516892110842615No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9850.182392208056736No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8480.15702395170772807No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7280.13480358118304955No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5760.1066577785184568No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5610.10388023220287199No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)