FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522494
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC10040.19215531661607596No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8830.16899715594820228No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7750.1483270621289431No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7450.14258536940137112No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7110.1360781176434562No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5740.10985772085421078No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)