FastQCFastQC Report
Wed 31 May 2023
EGAF00007926629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541728
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC10390.19179366767086065No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8790.16225855041644516No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8650.1596742276566838No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7200.13290802764486975No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7150.13198505523066925No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6110.1127872290152992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)