FastQCFastQC Report
Wed 31 May 2023
EGAF00007926631

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926631
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501908
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13110.26120324840409No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11160.2223515066506212No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9850.19625110578034224No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9650.19226631175434541No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8650.17234234162436143No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8560.1705491843126629No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8510.16955298580616368No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7760.1546100082086757No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6960.1386708321046885No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6160.12273165600070132No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5610.11177347242921014No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5410.10778867840321334No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5300.10559704168891511No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5060.10081528885771895No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)