FastQCFastQC Report
Wed 31 May 2023
EGAF00007926632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501908
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19430.38712273962558874No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17450.34767327876822046No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11340.22593782127401835No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10870.21657355531292588No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA10150.20222829681933743No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9840.19605186607904238No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA9430.18788303832574896No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9320.1856914016114507No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9110.18150736788415406No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7880.15700088462427378No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7400.14743737896188144No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7130.14205790702678578No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6500.12950580584489588No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5950.11854762227340469No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5870.11695370466300596No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5710.11376586944220853No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5210.10380388437721655No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5020.10001833005251959No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)