FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484464
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12210.2520311106707619No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10060.2076521681693583No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9990.20620727236698705No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9250.19093265959906205No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8740.18040556161035703No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8460.17462597840087188No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8360.1725618415403415No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8130.16781432676112157No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6650.13726510122527164No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5740.118481455794445No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5660.11683014630602068No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5320.10981208098021732No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4960.10238118828230787No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4900.10114270616598962No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)