FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484464
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44270.9137933881568083No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19910.4109696489316027No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17050.3519353347204333No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10630.21941774827438157No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10140.2093034776577826No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9880.2039367218204036No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9090.18763004062221342No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8880.18329535321509957No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8170.1686399815053337No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7630.15749364245846956No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6850.14139337494633245No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6630.13685227385316556No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6010.12405462531787709No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5830.12033917896892235No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5750.11868786948049805No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5180.10692228937547477No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)