FastQCFastQC Report
Wed 31 May 2023
EGAF00007926636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487120
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43530.8936196419773362No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19530.4009279027754968No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17360.3563803580226638No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10660.21883724749548367No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10280.2110362949581212No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9940.20405649531942846No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9910.20344063064542617No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8920.1831170964033503No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8240.16915749712596487No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT8220.16874692067663No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7180.14739694531121694No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6680.13713253407784531No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5980.12276235835112496No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5780.11865659385777631No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5610.11516669403842995No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5240.10757102972573493No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)