FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456132
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19170.42027307884559734No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16980.3722606613874931No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16020.35121412222777615No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13060.28632062648531564No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13030.2856629221365745No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12800.280620522129559No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT12460.2731665395104926No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9370.20542299159015373No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9320.20432681767558514No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8840.19380354809572667No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7450.16332991327071986No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7260.15916445239535926No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6770.14842194803258707No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6480.14206413932808923No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6470.1418449045451755No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5990.13132163496531707No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5900.1293485219190936No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5780.12671770452412898No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5630.12342918278042321No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5530.12123683495128604No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5430.11904448712214885No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5290.1159752001613568No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5050.11071356537142756No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4830.10589040014732577No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4740.10391728710110232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)