FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456132
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39990.8767198968719581No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25720.5638718616540827No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17090.37467224399954396No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16960.37182219182166565No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14300.31350573956661665No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14290.31328650478370296No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13580.297720835196829No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13280.29114379170941745No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12600.27623582647128464No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9730.21331544377504755No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9680.21221926986047895No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9290.20366911332684398No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8250.18086869590381732No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7580.16617996544859823No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7390.16201450457323757No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7180.15741057413204948No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6510.14272184367683038No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6490.14228337411100295No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6160.13504862627485026No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6060.1328562784457131No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5790.1269369393070427No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5730.12562153060956038No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5650.12386765234625063No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5620.1232099479975095No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5470.11992142625380373No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5300.11619443494427052No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5060.11093280015434129No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5030.11027509580560013No Hit
ACCCTGAACGGCGACGACCGTCACAAAATCG4740.10391728710110232No Hit
GGCTACACTTCCGGCCGTAACCTGTACACCA4720.10347881753527488No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4700.10304034796944746No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC4700.10304034796944746No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4650.10194417405487886No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)