FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459019
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20050.43680109102237596No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17040.37122646339258286No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16290.3548872704615713No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13580.2958483200041828No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12990.2829948215651204No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12600.2744984412409944No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT11990.2612092309904383No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9620.20957738132844173No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8930.1945453238319111No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8820.19214890886869607No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7740.1686204710480394No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7600.16557048836758392No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6580.14334918598140817No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6330.13790278833773767No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6240.13594208518601625No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6100.13289210250556077No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5950.12962426391935844No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5840.12722784895614342No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5820.1267921371446498No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5730.12483143399292838No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5650.12308858674695385No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5640.122870730841207No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5640.122870730841207No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5150.11219579145961278No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4770.10391726704123358No Hit
GACCGGGAACAGGGTATGGTCCGGACGTGCGGTGGCGTGTGGGT4690.10217441979525903No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4680.1019565638895122No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4670.10173870798376539No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4670.10173870798376539No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4600.10021371664353763No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)