FastQCFastQC Report
Wed 31 May 2023
EGAF00007926640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459019
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40200.8757807411022202No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27760.604767994353175No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16830.3666514893718996No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16420.35771939723628No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15170.33048740901792734No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14130.307830394820258No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13620.29671974362717013No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13160.28669837196281633No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12040.2622985105191724No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9760.21262736400889723No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9560.20827024589396081No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9390.20456669549626488No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8030.1749382923146972No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7740.1686204710480394No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7670.16709547970781166No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7280.15859909938368563No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6450.14051705920669952No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6360.1385563560549781No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6040.13158496707107986No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5970.1300599757308521No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5930.1291885521078648No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5810.12657428123890296No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5790.1261385694274093No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5770.12570285761591568No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5760.12548500171016885No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5690.1239600103699411No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5620.12243501902971336No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5010.10914580877915729No Hit
GGCTACACTTCCGGCCGTAACCTGTACACCA5000.10892795287341048No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4940.10762081743892955No Hit
GAACGTCCATCCGCCGGTGAAGCGCAGGCTC4940.10762081743892955No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4840.10544225838146133No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4830.1052244024757145No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4690.10217441979525903No Hit
ACCCTGAACGGCGACGACCGTCACAAAATCG4660.10152085207801856No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC4620.10064942845503128No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)