FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513097
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA21560.42019345269997677No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG14670.2859108511645946No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12980.25297360927855744No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG12620.24595739207206435No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG9810.19119191887693748No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9660.18826849504089868No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9520.1855399661272625No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9490.18495528136005474No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9230.17988801337758747No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6540.12746127925129166No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5570.10855647177824075No Hit
CATCGTTCCCCACTGTGTCGTGATGAAGACG5530.10777689208863041No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5230.10193004441655283No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5190.10115046472694247No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5150.10037088503733213No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)