FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493923
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44310.8971033946586816No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20310.4111976968069922No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12020.24335777034072112No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG11700.23687902770269859No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG11420.23121012789442888No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9980.20205578602332752No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9320.18869337933240607No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9180.1858589294282712No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8740.17695065830099024No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6030.12208380658523697No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5480.11094846767613574No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5400.10932878201663013No Hit
CATCGTTCCCCACTGTGTCGTGATGAAGACG5310.10750663564968628No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5310.10750663564968628No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5080.1028500393786076No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)