FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469699
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44080.9384733627280449No Hit
ATGTCCAACATGGACATCGATGGTATTAACA18160.3866305868226247No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13980.2976374231156549No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11640.24781828362419336No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7830.16670250522142904No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7500.15967672913929984No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7360.15669609686203292No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6270.13348974556045468No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG5800.12348333720105856No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4940.10517373892641885No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)