FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470771
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42510.9029868025005789No Hit
ATGTCCAACATGGACATCGATGGTATTAACA17350.36854436658162887No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14720.31267856346291506No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12060.25617550783714377No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7770.16504839932791102No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6970.14805499913970913No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6960.14784258163735658No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6290.1336106089797375No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG5890.12511390888563656No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5090.10812050869743464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)