FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483761
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA9500.19637796349850442No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8980.18562885391753364No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5450.11265893695440517No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5100.10542395935182869No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5070.10480381841446498No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4920.1017031137276465No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4890.1010829727902828No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT4890.1010829727902828No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4860.10046283185291911No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)