FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926661
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497754
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA28950.581612603816343No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA27070.5438429424976997No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18210.36584336841090176No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17390.34936936719745093No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14640.2941211923962439No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11580.2326450415265372No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11040.22179630902011838No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10670.21436291822868325No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10660.21416201577486066No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10110.2031123808146193No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9390.18864740413939415No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9350.1878437943241039No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9320.18724108696263617No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8840.17759776917915274No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8790.1765932569100399No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8150.16373549986539535No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7810.15690481643542795No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7560.15188225508986367No Hit
GGCGCGCGGTGGGGTCTGCATAGTCGCCGGTGCCCACTGACGCA7190.14444886429842854No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6800.13661366859934826No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6430.12918027780791314No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6240.12536313118528428No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6090.12234959437794574No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5960.1197378624782523No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5940.11933605757060717No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5260.10567469071067234No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5230.10507198334920463No Hit
CAGACCCAGTTCGCTACCGTTCCAACCTACGCCGTAGTTGGTAG5150.10346476371862405No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5150.10346476371862405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)