FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497754
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT65881.3235453657830976No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24750.4972335732108632No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18890.3795047352708366No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15900.31943490157788784No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12720.2555479212623103No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11670.23445316361094035No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11520.23143962680360178No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11440.2298324071730212No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10990.22079179675100555No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10300.2069295274372481No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10090.20271057590697414No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9730.19547808756936158No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9700.19487538020789386No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9470.19025462376997473No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9350.1878437943241039No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9130.1834239403400073No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8460.16996347593389508No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7790.15650301152778281No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7510.1508777428207508No Hit
GTAGGTCCAACCCCTCACCAGACCCCGCAGG7200.1446497667522511No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7000.14063171767579968No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7000.14063171767579968No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6680.13420283915347742No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6240.12536313118528428No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6220.12496132627763915No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6020.12094327720118772No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5960.1197378624782523No Hit
CCACTGGGCAAAACCCCGGTTGTTTACGGCT5770.11592071585562345No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5070.10185754408804348No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5020.10085303181893064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)