FastQCFastQC Report
Wed 31 May 2023
EGAF00007926664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484207
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT66921.3820535432160213No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43840.9053978980064312No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24200.4997862484433311No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17580.36306786147246944No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15630.32279582905658116No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11750.24266481071112148No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11310.23357778801215184No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11280.2329582182826766No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10990.226969044231083No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10260.21189284748051967No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10240.21147980099420288No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10020.20693628964471808No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9780.20197973180891643No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9630.1988818831615404No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9260.19124052316467957No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9020.18628396532887795No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8290.17120776857831463No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7470.15427286263932574No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7370.15220763020774172No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7010.1447727934540393No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6860.1416749448066633No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6580.13589229399822803No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6440.1330009685940104No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6330.130729212919268No Hit
GTAGGTCCAACCCCTCACCAGACCCCGCAGG6280.129696596703476No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5960.12308785292240716No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5540.11441387670975431No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5250.10842470265816068No Hit
CCACTGGGCAAAACCCCGGTTGTTTACGGCT5010.10346814482235904No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4890.10098986590445821No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)