FastQCFastQC Report
Sun 21 May 2023
EGAF00007926667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498963
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23030.4615572697775186No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19280.38640139649633337No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15070.30202640275932285No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14310.28679481244100263No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13920.2789786016197594No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13490.27036072815018347No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13290.26635241490852024No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12210.24470752340353896No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11610.23268258367854933No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11560.23168050536813348No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10940.21925473431897757No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9900.19841150546232889No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC9330.18698781272358872No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9270.18578531875108978No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8230.16494208989444106No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8140.16313834893569262No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6990.14009054779612917No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6960.1394893008098797No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6700.1342784935957175No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6530.1308714273403038No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6430.12886727071947218No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6170.12365646350531001No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6130.12285480085697736No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6040.12105105989822892No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC5970.1196481502636468No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5540.11103027679407089No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5470.10962736715948879No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5200.10421614428324345No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5120.10261281898657816No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)