FastQCFastQC Report
Wed 31 May 2023
EGAF00007926668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498963
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32410.6495471608115231No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29910.599443245290733No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26410.5292977635616268No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23770.47638802877167247No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15850.31765882440180937No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14670.2940097762759964No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13840.2773752763230941No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13040.26134202335644124No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12930.2591374510735265No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12590.2523233185626991No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10910.21865348733272807No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10610.21264101747023326No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10160.20362231267649103No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9540.1911965416273351No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8990.18017368021276128No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8730.17496287299859908No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8240.16514250555652424No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6980.139890132134046No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6960.1394893008098797No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6620.13267516829905224No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6390.12806560807113954No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6190.12405729482947633No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG6140.12305521651906054No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5990.12004898158781312No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5970.1196481502636468No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5920.11864607195323101No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5920.11864607195323101No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5530.11082986113198776No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5370.10762321053865717No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5080.10181115633824551No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5030.10080907802782972No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5010.10040824670366341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)