FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486540
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45530.9357915073786327No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32030.6583220290212521No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28110.577753113824146No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25520.5245200805689152No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22490.46224359764870315No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14390.29576191063427465No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13710.28178567024293993No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13670.2809635384552144No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13530.27808607719817485No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12960.2663706992230854No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12250.2517778599909566No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11040.22690837341225797No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10230.21026020471081514No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10070.20697167755991283No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9070.18641838286677356No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8890.18271878982200848No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7720.15867143503103545No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6850.14079006864800428No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6580.13524067908085666No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6520.1340074813992683No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6150.12640276236280676No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5950.1222921034241789No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5810.11941464216713939No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5740.11797591153861964No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5660.1163316479631685No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5580.11468738438771735No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5330.10954906071443252No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG5320.10934352776750113No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5280.10852139597977556No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5230.1074937312451186No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4910.10091667694331402No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)