FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495287
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA36330.733514103943774No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32410.6543680734604381No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21300.430053686044657No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18130.36605039098542863No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17840.3601951999547737No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17820.35979139367679747No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17680.35696474973096404No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16660.3363706295541777No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12450.25136940804018676No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11670.23562096319911485No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10950.2210839371919715No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9830.19847078562530412No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8950.18070330939435117No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8800.1776747623095296No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8640.17444431208572No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8350.16858912105506504No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8320.16798341163810074No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7640.1542539981869098No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7570.1528406762139931No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7330.14799500087827866No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6900.13931316590179027No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6880.13890935962381407No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6380.12881420267440896No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5780.11670001433512288No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5490.11084482330446792No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5390.1088257919145869No Hit
GTTCTGGTTAACGAAGGTAACGGTTATGTGG5310.10721056680268208No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5200.10498963227381297No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5100.10297060088393195No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5070.10236489146696764No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5020.10135537577202712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)