FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926674

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926674
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482055
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43180.8957484104510897No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34750.7208720996566781No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30300.6285589818589166No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20480.424847787078238No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16990.3524494092997687No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16930.3512047380485629No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16840.34933773117175426No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16800.3485079503376171No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15340.31822094989160987No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11210.23254607876694566No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10670.2213440375060937No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9750.20225907832093848No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9530.19769528373318399No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8880.18421134517845472No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8700.18047733142483743No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8480.1759135368370829No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7910.16408915995062803No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7590.15745091327753058No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7510.15579135160925622No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7240.15019033097883022No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6630.13753617325823816No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6430.13338726908755225No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5990.12425967991204323No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5830.1209405565754945No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5610.11637676198773998No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5300.10994596052317683No Hit
GTTCTGGTTAACGAAGGTAACGGTTATGTGG5210.10807895364636816No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5170.10724917281223097No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4990.10351515905861364No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4990.10351515905861364No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4910.10185559739033928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)