FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences561940
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15960.2840160871267395No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14920.26550877317863114No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9800.17439584297255936No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9120.16229490692956544No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8080.1437875929814571No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7280.12955119763675838No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7200.1281275581022885No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6090.10837455956151903No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5770.10268000142363953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)