FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences561940
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20660.3676549097768445No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16250.2891767804391928No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15090.26853400718937964No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12280.2185286685411254No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11310.20126703918567818No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11170.19877567000035593No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7820.13916076449443No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7530.1340000711819767No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6730.119763675837278No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6540.11638253194291207No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6340.11282343310673737No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6310.11228956828131116No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)