FastQCFastQC Report
Sun 21 May 2023
EGAF00007926678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544264
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50390.9258374612320491No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19150.35185130745373566No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16380.3009568885687828No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15550.2857069363397175No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12220.22452339305925065No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10680.1962283009715873No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7650.14055678861728868No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7430.13651463260476532No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7290.13394235150588685No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5910.10858700924551322No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5900.10840327488130759No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5860.10766833742448519No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)