FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926686

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926686
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532089
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA32210.6053498568848446No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA21910.41177321839015657No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15500.291304650161909No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14440.27138317086051394No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14290.26856409360088257No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13470.2531531379148977No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12580.23642661284108488No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9780.1838038373279658No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9090.17083608193366148No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8700.1635064810586199No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8640.16237885015476733No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8610.16181503470284106No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8050.15129047960021727No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8040.15110254111624183No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7630.1433970632732494No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6700.12591878426353487No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5950.11182339796537796No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5910.11107164402947628No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5790.10881638222177117No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5640.1059973049621398No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5610.1054334895102135No Hit

[OK]Adapter Content

Adapter graph