FastQCFastQC Report
Sun 21 May 2023
EGAF00007926688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514446
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47450.9223514226954822No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31310.6086158702759862No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA21160.411316250879587No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15330.29799045964007886No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13650.26533397091239896No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13580.26397328388207897No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13210.25678108100753044No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11780.22898418881670768No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8810.17125218195884506No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8340.16211614046955364No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7940.15434078601058226No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7690.14948118947372513No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7530.1463710476901366No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7350.14287213818359945No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7000.13606870303199947No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6060.11779662005341669No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5840.11352017510098242No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5690.11060441717886814No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5350.10399536588874246No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5190.1008852241051539No Hit

[OK]Adapter Content

Adapter graph