FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007926690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473988
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43730.9225971965534991No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23970.5057090052912732No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21660.4569735942682093No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17440.36794180443386754No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13440.283551482316008No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12880.2717368372195077No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12850.27110390980362375No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10350.2183599584799615No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9080.19156603120754112No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8310.17532089419985314No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8150.17194528131513878No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6860.1447294024321291No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6640.14008793471564682No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6480.13671232183093243No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6150.12975012025620902No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6000.1265854831767893No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5870.12384279770795885No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5600.11814645096500333No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5360.11308303163793176No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5010.10569887845261905No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4840.10211228976261001No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4810.10147936234672608No Hit

[OK]Adapter Content

Adapter graph