FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007926692

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007926692
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491451
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25760.5241621239960851No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23130.4706471245353046No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19140.3894589694598241No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14580.2966725065164177No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13830.2814115751112522No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12400.2523140658987366No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9680.19696775466933633No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9650.19635731741312967No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8920.1815033441787686No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8720.17743376247072445No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8630.1756024507021046No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7380.1501675650268287No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6870.13979013167131615No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6820.13877273624430514No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6810.13856925715890292No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6250.12717442837637932No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6120.12452920026615065No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5850.11903526496029106No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5690.11577959959385574No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5230.10641956166535423No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4960.10092562635949465No Hit

[OK]Adapter Content

Adapter graph